PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC18427_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 251aa    MW: 28317.1 Da    PI: 8.202
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC18427_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.73.7e-1772124155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  ++ +hn++Er+RR++ Ns f+ Lr++lP  +   +skKls  e++ + v+YI +Lq
  RrC18427_p1  72 KKLNHNANERNRRQKANSLFSSLRSCLPRsD---QSKKLSNPETVSRSVQYIPDLQ 124
                  6789*************************66...********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.55171123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-1472124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.87E-1472128No hitNo description
SuperFamilySSF474597.72E-1672140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-1372137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-1277129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MRALGPLLFP NSGWAPTGEC ESYKLVGDSH NNDTFLDFPV PKTYGVVHHQ TSLGVPVLSE  60
GNGLNNNSVV IKKLNHNANE RNRRQKANSL FSSLRSCLPR SDQSKKLSNP ETVSRSVQYI  120
PDLQEEVKKL IQKKEDLLVR VSDQRERYVK PQPKMAASYF STVFATNLID NEVTVQISSS  180
KIHNISICNV LSGLEEDGFV MLDVSSSSSQ GERLFYTLHL QIDKIDNYKL ICEDLSQRVL  240
YLYEKCGNSF K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603898.11e-163PREDICTED: transcription factor ORG2-like
RefseqXP_013710728.11e-163PREDICTED: transcription factor ORG2-like
SwissprotQ9M1K11e-121ORG2_ARATH; Transcription factor ORG2
TrEMBLA0A078JV011e-164A0A078JV01_BRANA; BnaUnng04340D protein
STRINGBra007289.1-P1e-159(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48228153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.11e-122bHLH family protein